Command: segment

Segment a BED/qBED file using Bayesian blocks

usage: blockify segment [-h] -i INPUT [--prior PRIOR | --p0 P0]
                        [--method {OP,PELT}]
                        output

Named Arguments

-i, --input

Input file

output

Output file (BED format); default: stdout

--prior

Explicit prior on the number of blocks (not recommended for general use)

--p0

Empirical prior based on a specified false-positive rate; must be between 0 and 1 (default: 0.05)

--method

Possible choices: OP, PELT

Segment using the optimal partitioning (OP) or pruned exact linear time (PELT) algorithm (default: “PELT”)